My only concern is that it looks like they retrofitted a Mid Range and tried to convert to Performance... is the battery the only thing different? I'm concerned about motor as it shown some issues 2 times when front motor was temporarily disabled.
There are other differences, the standard/standard plus do not have the sub-woofer or the larger brakes either and there are the obvious software differences as well as the P3D being all wheel drive.
Let them know you want proof that the car is feature complete. And make sure they are aware of the front motor issues.
It's more likely that an incorrect build sku was entered during manufacturing. Tesla's been messing with them so much that it's not a surprise that something like this has happened. But they will make things right, and unless there is some weird software lock on the battery, your going to get a new one, so that's a plus. (Tesla iterates so the packs change slightly fairly often)
Hey and don't be afraid to ask for something for your trouble.

Tesla will often surprise you with this regard.
Let them know your confidence is shaken and tell them the steps you've taken to get to where you are now.