JMatero, I'm having a similar issue with my new Model 3. I took delivery 1 month ago, and there is major wind noise from the driver window - B-pillar. Have had it serviced TWICE and still there is wind noise.
The driver window is canted OUT by about 1/8 inch from the B-pillar. The driver front window, B-pillar & rear window are NOT FLUSH. Also the bottom of the driver door is canted IN by about 1/8 inch. The hood of the car is also askew -- driver front edge of hood is up by 1/8 inch, and passenger side is indented by 1/8 inch.
On the passenger side, the doors, windows and B-pillar all line up flush with one another.
Anyone have this issue?