Picked up mine last Friday and, yes, it had some of the issues noted. The charge port door was poorly aligned. A door handle is overly inset. The hatch doesn't line up quite as well as I'd like. The charge door and handle have a ranger visit to fix. The hatch, we were told, you can tweak with the little stoppers on the hatch itself, but if you over do it the hatch won't latch. The infamous statement "it's within specs" came up.
Tesla seems to have the exact same problems with manufacturing that they had 8 years ago with my 2012 Model S. Just go in realizing Tesla isn't very good at these details and doesn't seem to care much. I suspect, until they become demand limited, they'll continue to make it low priority.
I walked up and down the 7 or 8 cars also being delivered at the same moment mine was and most of them had some thing that I'd have flagged on my checklist. The charge port door alignment seems to be particularly problematic. I don't know why they switched from the way the Model S did it, that 3/Y one seems flimsy by comparison.
All that said, overall it's a nice looking car and we're happy with it so far. It helps that the Portland, OR service center is pretty well run. I'd be a lot more nervous about my purchase if I had to go to one of the service centers that consistently gets bad reviews.