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Road noise for me too, and wind noise from the windows at speed on a windy day. Will be interesting to see if the dual pane glazing makes any significant difference. .... Wind noise seems to come from the frameless windows, but never had a car with them before to compare, but regardless they should still be properly sealed.
+1*Other: When its raining and opening the boot - the water that rolls off of the boot lid onto the rear window and then cascades down into the open boot (aka "the trunk"). Californian car design at its best!
[hopefully now fixed in the latest revamp]
For me the most annoying thing is the Auto wipers, which are alot better than they used to be but still not great and most of all the Auto Headlight main beam which i keep switched off because, well.. its totally crap! The worst thing about having it turned on is that, when it doesnt work and you try to turn on the main beam manually, theres about a 3 second delay before anything happens, in which time you could eaisly end up in a ditch on a dark road that you diddnt see!! It's just dangerious - dont use it!
Not being able to open the charge port "on-site", only through app or screen.
I drove an S loaner the other day.. it was practically silent compared to the model 3, really showed the difference.