Battery degradation is a known issue. I generally say that a Tesla battery will degrade 5% the first year, then about 1% each year after that. It should be a long time before it gets to where it won't charge any higher than 70%, but it will degrade slowly.
We know that running the battery low, like near 10%, or charging up above 90%, will cause more rapid degradation, so most people charge inside that range, some being even more careful and charging between 20% and 80%. Supercharging does not seem to affect degradation, other than the afore mentioned discharging to a low percentage or charging over 90%, although there is evidently a problem with letting the car sit with a high charge even at home. This is why the cars now try to charge up to be full to "leave at 8AM" or some such, so they will start a 4 hour charge cycle at 4AM to be finished by 8AM when it is expected you will stop the charging and go to work, so the car will not sit at full charge.
There is something to the "calibration". The car makes an estimate as to how much charge is left in the battery and then estimates how much range there might be if charged to full, and it's a complicated estimate. Some have found that running the car down to 5% and then charging to 95% lets the car recalibrate, but I've never noticed this on my last 4 Teslas.
And trying to compare that estimate to how many miles you get in your real world personal driving style is hard for Tesla to estimate. It has to go back and check your driving style over the past several dozens to hundreds of miles. Tesla's estimate is based on doing 60 mph steady, and you don't drive that way. I hope.