An unconscious or incapacitated driver is a bad and dangerous situation no matter what autopilot does, but I think stopping the car is the best thing. As the previous poster said, it does put on the flashers and stop slowly, so it’s not like it just slams on the brakes. But frankly, the fact that there is a car stopped in the middle of the road is much more likely to get someone noticed and get them the help they might need as soon as possible. If someone is, say, having a heart attack and their car just pulls off to the side of the road or keeps driving then it’s likely that no one would even know that they were in distress.
But even beyond that, autopilot isn’t to the the state where it can just keep driving unsupervised. It doesn’t see stop signs or traffic lights, so if you were on a surface street it’s going to blow through red lights or stop signs and cause an accident. Or it could come to a T intersection and just drive straight off the road. Even if it’s on a highway there is no guarantee of traffic in a lot of places and it could drive for 100 miles or more before the battery died and it would just stop in the middle of the road anyway at that point.
I think stopping the car as soon as possible is the best option.