Bear in mind that the SOC display is an estimate, not a definitive measurement. SOC is actually quite difficult to measure. As I understand it (don't have inside knowledge of Tesla's algorithm), SOC is estimated in part by the response of the battery to charging. So the voltage and current supplied to the charger definitely matter. Temperature matters. There may be other variables. I have seen this with my Roadster. Sometimes the number is exactly the same charge after charge; sometimes it goes down; sometimes it goes up.
Also, bear in mind that true maximum capacity, and the point at which charging stops, are not the same thing. I suspect that Tesla messed with the latter under the covers when the new variable slider came out with 4.5. I do not just mean that the old Standard charge is not the same as the "detent" in the slider, but the details of the algorithm that tells the charger to shut down may have changed.
Like everyone else here, I sure wish JB would publish an updated blog on this, with clear details and unambiguous user guidance. I suspect Tesla is getting more protective about this stuff though, now that they know the majors are paying attention to the competitive threat they now represent.
In the end though, Tom Saxton's work has borne out Elon's repeated assurances that people will be pleasantly surprised at the longevity of the batteries in the long term.